Computational Cluster Programs
Visualization Software on ATS-Hosted Clusters
Software Versions Available on ATS-Hosted Clusters
| Application | Hoffman2 | Cardio | CNSI2 | Hydro | Neutrino |
| GaussView | 3 B.05, 98 | ||||
| gnuplot | 4.0.0-12 | ||||
| IDL | 6.3 | ||||
| ImageMagick | 6.2.8.0-3 | 6.3 | |||
| Jmol | Yes | ||||
| Maple | 11 | 11 | |||
| Mathematica | 5.1 | 5.1 | |||
| Matlab | 7.4 | Yes | |||
| NCAR NCL and PyNGL | NCL 4.3.0, PyNGL 0.1.1b8 | ||||
| Netpbm | 10.35-6 | ||||
| OpenDX | |||||
| ParaView | 3.2.1 | ||||
| POV-Ray | 3.6.1 | 3.6.1 | |||
| R | 2.6.1 | ||||
| RasMol | 2.7.1 | ||||
| Stata | 10 | ||||
| Tecplot | 360 |
Visualization Software Available through the UCLA Grid Portal
Both Jmol and an interactive interface to IDL for visualizing 2D and 3D gridded data are available directly from the UCLA Grid Portal. Click on the Data Manager tab. Then select the file that you want to visualize and click on Visualize.
Software Package Information and Documentation Links
| Application | Brief Description | Supported | From | Documentation |
| GaussView | A graphical user interface for preparing input to, submitting, and viewing results from the Gaussian program. | No | Gaussian, Inc. |
- How to run on ATS-Hosted Clusters
- GaussView 3 Help - GaussView 4 Help |
| gnuplot | A command-line driven interactive data and function plotting program. | No | gnuplot Project |
- How to run on ATS-Hosted Clusters
- gnuplot Manual |
| IDL | A software package, development environment and programming language for data analysis and visualization. | No | ITT Corporation |
- How to run on ATS-Hosted Clusters
- IDL Documentation |
| ImageMagick | A suite of programs used to create, edit, and compose images. ImageMagick can read, convert and write images in over 100 image formats. It can translate, flip, mirror, rotate, scale and otherwise transform images. It can adjust colors, apply various special effects, and do drawing on images. | No | ImageMagick Studio LLC |
- How to run on ATS-Hosted Clusters
- ImageMagick Home Page |
| Jmol | An open-source Java viewer for chemical structures in 3D with features for chemicals, crystals, materials and biomolecules. | No | Jmol Project |
- How to run on ATS-Hosted Clusters
- Jmol Documentation - Jmol Wiki |
| Maple | A symbolic and numeric mathematical program. Major areas include: algebra, calculus, differential equations, linear algebra, and statistics. Integrated visualization. | Yes | Waterloo Maple Inc. |
- How to run on ATS-Hosted Clusters
- Maple Documentation |
| Mathematica | A scientific program which features mathematical computation, symbolic manipulation, a large collection of numeric functions, graphics and a high-level programming language. | Yes | Wolfram Research, Inc. |
- How to run on ATS-Hosted Clusters
- Mathematica Documentation |
| Matlab | A language for technical computing that combines numeric computation, advanced graphics and visualization, and a high-level programming language. | Yes | MathWorks, Inc. |
- How to run on ATS-Hosted Clusters
- Matlab Documentation |
| NCAR NCL and PyNGL | An interpreted language designed specifically for scientific data processing and visualization. | No | National Center for Atmospheric Research |
- How to run on ATS-Hosted Clusters
- NCL Documentation |
| Netpbm | A toolkit for the manipulation of graphic images, including conversion of images between a over 100 different graphic formats. | No | Bryan Henderson |
- How to run on ATS-Hosted Clusters
- Netpbm Home Page - Netpbm User Manual |
| OpenDX | A full-featured general-purpose software package for the visualization of scientific, engineering and analytical data. Programmable and with a GUI interface built around data flows. | No | OpenDX.org |
- How to run on ATS-Hosted Clusters
- Download Documentation |
| ParaView | A multi-platform application with an available GUI interface, designed to visualize data sets of sizes varying from small to very large. Supports distributed computation models to process large data sets. | No | Kitware Sandia National Labs, CSimSoft, Los Alamos National Lab, Army Research Lab and others |
- How to run on ATS-Hosted Clusters
- ParaView Home Page - Documentation provided interactively as Help. ParaView Guide a book is available for purchase. |
| POV-Ray | A high-quality ray tracer for creating stunning three-dimensional graphics. | No | Persistence of Vision Raytracer Pty. Ltd |
- How to run on ATS-Hosted Clusters
- Download Documentation - Read Documentation |
| R | A language and environment for statistical computing and graphics. R provides a wide variety of statistical (linear and nonlinear modelling, classical statistical tests, time-series analysis, classification, clustering, ...) and graphical techniques. | No | The R Project for Statistical Computing |
- How to run on ATS-Hosted Clusters
- R Home Page |
| RasMol | A molecular graphics program intended for the visualization of proteins, nucleic acids and small molecules. | No | Bernstein + Sons |
- How to run on ATS-Hosted Clusters
- RasMol Home Page - RasMol 2.7.3 Manual |
| Stata | Stata is a complete, integrated statistical package that provides a broad suite of statistical capabilities, complete data-management facilities, and publication-quality graphics. | Yes | StataCorp LP |
- How to run on ATS-Hosted Clusters
- Stata manuals are NOT available online. They may be borrowed from ATS Statistical Consulting |
| Tecplot | A program for the visualization and animation of scientific and engineering data. Includes support for CFD-type data. | Yes | Tecplot Inc. |
- How to run on ATS-Hosted Clusters
- Tecplot Documentation |
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